PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G049600.7.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 352aa    MW: 37740.2 Da    PI: 10.2388
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G049600.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.8e-11159199343
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Sevir.1G049600.7.p 159 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 199
                         67999*************************86555555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.4E-5157210IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-8157203No hitNo description
PROSITE profilePS502178.979159203IPR004827Basic-leucine zipper domain
PfamPF001707.5E-9160199IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.75E-7161204No hitNo description
PROSITE patternPS000360164179IPR004827Basic-leucine zipper domain
PfamPF141441.7E-26245328IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIRKEPGGG YDMAEFDQAL FLYLNSQDQT  60
SAAHHQDQPQ TLNIFPSQPM HIAEPAPKGS MGTSNTAPIA GAGPSKQPPP PSNHPSRPTP  120
AALKDGKPAG VKREGSSGAA TGSGTPSTSN QQEGPRTPDA KTLRRLAQNR EAARKSRLRK  180
KAYIQNLETS RIRLSQLEQE LHRSRNQGAV FGGGALSGSN GGLSPEAAWF DMEHARWQEE  240
HGKMMRHLRA ALEAADQQHP AAPAPAPAAD AQLRQLVDAA AAHHGVLADL KAAVASADAF  300
HLVSGAWASA AERCFLWIGG FRPSELIKDS RLDRRWRRGW LTYLQQCKGR A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041841e-54AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBankAP0149581e-54AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-54CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951577.10.0PREDICTED: transcription factor TGA2-like isoform X2
SwissprotP432733e-55TGA2_ARATH; Transcription factor TGA2
TrEMBLC5XXG41e-132C5XXG4_SORBI; Putative uncharacterized protein Sb04g006500
STRINGSb04g006500.11e-131(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.33e-60bZIP family protein